Hinweis: Die Berechnung der Tabelle erfolgt nach der 3-Punkte-Regel
| # | Mannschaft | Sp. | S | U | N | Tore | Dif | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Bayern München II | 355 | 202 | 86 | 67 | 763:389 | 374 | 692 |
| 2 |
|
1. FC Nürnberg II | 381 | 170 | 93 | 117 | 679:521 | 158 | 603 |
| 3 |
|
FV Illertissen | 381 | 168 | 89 | 123 | 629:548 | 81 | 593 |
| 4 |
|
FC Augsburg II | 382 | 141 | 99 | 140 | 627:554 | 73 | 522 |
| 5 |
|
TSV Buchbach | 382 | 140 | 99 | 141 | 546:566 | -20 | 519 |
| 6 |
|
1. FC Schweinfurt 05 | 345 | 138 | 87 | 119 | 602:541 | 61 | 501 |
| 7 |
|
SpVgg Greuther Fürth II | 382 | 131 | 84 | 166 | 527:581 | -54 | 477 |
| 8 |
|
Wacker Burghausen | 307 | 130 | 66 | 110 | 467:400 | 67 | 456 |
| 9 |
|
SpVgg Bayreuth | 273 | 117 | 60 | 95 | 453:410 | 43 | 411 |
| 10 |
|
FC Memmingen | 341 | 108 | 84 | 147 | 456:547 | -91 | 408 |
| 11 |
|
SV Schalding-Heining | 305 | 92 | 67 | 144 | 397:563 | -166 | 343 |
| 12 |
|
Viktoria Aschaffenburg | 282 | 89 | 75 | 116 | 392:453 | -61 | 342 |
| 13 |
|
Würzburger Kickers | 179 | 99 | 43 | 37 | 369:202 | 167 | 340 |
| 14 |
|
FC Ingolstadt 04 II | 246 | 95 | 69 | 82 | 416:356 | 60 | 309 |
| 15 |
|
SpVgg Unterhaching | 144 | 85 | 34 | 25 | 313:147 | 166 | 289 |
| 16 |
|
TSV 1860 Rosenheim | 242 | 70 | 59 | 112 | 284:430 | -146 | 269 |
| 17 |
|
SV Heimstetten | 244 | 71 | 53 | 119 | 342:482 | -140 | 266 |
| 18 |
|
TSV 1860 München II | 176 | 95 | 39 | 42 | 245:148 | 97 | 261 |
| 19 |
|
VfB Eichstätt | 173 | 69 | 41 | 62 | 283:264 | 19 | 248 |
| 20 |
|
TSV Aubstadt | 135 | 59 | 35 | 40 | 232:174 | 58 | 212 |
| 21 |
|
TSV 1896 Rain | 210 | 56 | 39 | 114 | 249:411 | -162 | 207 |
| 22 |
|
SV Seligenporten | 178 | 51 | 39 | 88 | 222:327 | -105 | 192 |
| 23 |
|
VfR Garching | 160 | 51 | 36 | 71 | 232:300 | -68 | 189 |
| 24 |
|
Eintracht Bamberg | 141 | 37 | 41 | 63 | 180:254 | -74 | 152 |
| 25 |
|
FC Pipinsried | 146 | 39 | 33 | 74 | 178:303 | -125 | 150 |
| 26 |
|
DJK Vilzing | 71 | 36 | 12 | 23 | 127:106 | 21 | 120 |
| 27 |
|
Türkgücü München | 94 | 28 | 13 | 30 | 93:106 | -13 | 95 |
| 28 |
|
SpVgg Ansbach | 71 | 25 | 13 | 33 | 101:123 | -22 | 88 |
| 29 |
|
SpVgg Bayern Hof | 108 | 23 | 19 | 66 | 116:211 | -95 | 88 |
| 30 |
|
TSV 1860 München | 36 | 26 | 5 | 5 | 87:27 | 60 | 83 |
| 31 |
|
SC Eltersdorf | 76 | 22 | 14 | 40 | 105:154 | -49 | 80 |
| 32 |
|
Jahn Regensburg | 34 | 19 | 7 | 8 | 61:36 | 25 | 64 |
| 33 |
|
FC Ismaning | 38 | 8 | 12 | 18 | 38:48 | -10 | 36 |
| 34 |
|
SpVgg Hankofen-Hailing | 38 | 10 | 6 | 22 | 47:90 | -43 | 36 |
| 35 |
|
VfL Frohnlach | 38 | 8 | 11 | 19 | 40:64 | -24 | 35 |
| 36 |
|
FC Amberg | 34 | 6 | 11 | 17 | 36:57 | -21 | 29 |
| 37 |
|
FC Unterföhring | 36 | 3 | 11 | 22 | 36:87 | -51 | 20 |
