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| 08.11.2008 | 15:00 | FK Dukla Banská Bystrica | - | 1. FC Tatran Prešov | 2:1 (0:0) | |
| 16:00 | MFK Ružomberok | - | MFK Dubnica | 2:2 (0:1) | ||
| 16:30 | MFK Košice | - | FC DAC 1904 | 1:1 (0:0) | ||
| 17:00 | Slovan Bratislava | - | Zlaté Moravce | 6:0 (1:0) | ||
| 17:00 | Spartak Trnava | - | FC Artmedia Petržalka | 4:2 (3:2) | ||
| 09.11.2008 | 17:15 | FC Nitra | - | MŠK Žilina | 0:2 (0:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Slovan Bratislava | 15 | 10 | 3 | 2 | 35:11 | 24 | 33 |
| 2 |
|
MŠK Žilina | 15 | 9 | 3 | 3 | 27:8 | 19 | 30 |
| 3 |
|
Spartak Trnava | 15 | 8 | 5 | 2 | 22:12 | 10 | 29 |
| 4 |
|
MFK Košice | 15 | 7 | 5 | 3 | 23:19 | 4 | 26 |
| 5 |
|
MFK Ružomberok | 15 | 5 | 6 | 4 | 20:15 | 5 | 21 |
| 6 |
|
FC DAC 1904 | 15 | 5 | 5 | 5 | 18:19 | -1 | 20 |
| 7 |
|
1. FC Tatran Prešov | 15 | 6 | 2 | 7 | 18:27 | -9 | 20 |
| 8 |
|
FK Dukla Banská Bystrica | 15 | 4 | 4 | 7 | 10:15 | -5 | 16 |
| 9 |
|
MFK Dubnica | 15 | 4 | 3 | 8 | 21:25 | -4 | 15 |
| 10 |
|
FC Nitra | 15 | 4 | 2 | 9 | 13:29 | -16 | 14 |
| 11 |
|
FC Artmedia Petržalka | 15 | 3 | 4 | 8 | 18:25 | -7 | 13 |
| 12 |
|
Zlaté Moravce | 15 | 2 | 4 | 9 | 6:26 | -20 | 10 |
