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| 12.05.2012 | 10:15 | FK Fotbal Třinec | - | AC Sparta Praha B | 0:2 (0:1) | |
| 10:15 | Bohemians Praha | - | Tescoma Zlín | 0:0 (0:0) | ||
| 10:15 | FK Baník Sokolov | - | FK Baník Most | 0:2 (0:1) | ||
| 10:15 | FK Ústí nad Labem | - | FC Graffin Vlašim | 1:0 (1:0) | ||
| 17:00 | FK MAS Táborsko | - | SFC Opava | 1:6 (0:1) | ||
| 13.05.2012 | 17:00 | FK Čáslav | - | FK Varnsdorf | 0:0 (0:0) | |
| 17:00 | 1. SC Znojmo | - | MFK Karviná | 0:0 (0:0) | ||
| 17:00 | Zbrojovka Brno | - | Vysočina Jihlava | 0:2 (0:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FK Ústí nad Labem | 28 | 18 | 3 | 7 | 48:32 | 16 | 57 |
| 2 |
|
Vysočina Jihlava | 28 | 15 | 7 | 6 | 42:27 | 15 | 52 |
| 3 |
|
FK Baník Sokolov | 28 | 13 | 7 | 8 | 38:30 | 8 | 46 |
| 4 |
|
Bohemians Praha | 28 | 13 | 6 | 9 | 41:28 | 13 | 45 |
| 5 |
|
Zbrojovka Brno | 28 | 11 | 10 | 7 | 34:29 | 5 | 43 |
| 6 |
|
MFK Karviná | 28 | 12 | 6 | 10 | 36:34 | 2 | 42 |
| 7 |
|
FK Varnsdorf | 28 | 10 | 11 | 7 | 32:32 | 0 | 41 |
| 8 |
|
SFC Opava | 28 | 10 | 8 | 10 | 41:34 | 7 | 38 |
| 9 |
|
FK Baník Most | 28 | 10 | 5 | 13 | 28:42 | -14 | 35 |
| 10 |
|
Tescoma Zlín | 28 | 9 | 8 | 11 | 25:30 | -5 | 35 |
| 11 |
|
FK MAS Táborsko | 28 | 10 | 4 | 14 | 36:46 | -10 | 34 |
| 12 |
|
1. SC Znojmo | 28 | 8 | 9 | 11 | 27:33 | -6 | 33 |
| 13 |
|
FK Čáslav | 28 | 8 | 9 | 11 | 27:35 | -8 | 33 |
| 14 |
|
FC Graffin Vlašim | 28 | 8 | 8 | 12 | 34:37 | -3 | 32 |
| 15 |
|
FK Fotbal Třinec | 28 | 6 | 9 | 13 | 27:37 | -10 | 27 |
| 16 |
|
AC Sparta Praha B | 28 | 7 | 2 | 19 | 35:45 | -10 | 23 |
| Aufstieg | |
| Abstieg |
