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| 31.03.2017 | 18:00 | FK Ústí nad Labem | - | Dynamo České Budějovice | 0:0 (0:0) | |
| 18:00 | Sigma Olomouc | - | FK Fotbal Třinec | 1:0 (1:0) | ||
| 19:00 | 1. SC Znojmo | - | 1. SK Prostějov | 3:1 (0:1) | ||
| 01.04.2017 | 10:15 | FK Baník Sokolov | - | Viktoria Žižkov | 0:5 (0:3) | |
| 16:30 | MFK Frýdek-Místek, a.s. | - | FK MAS Táborsko | 1:3 (1:1) | ||
| 18:00 | SFC Opava | - | FK Pardubice | 1:2 (1:0) | ||
| 02.04.2017 | 13:30 | Baník Ostrava | - | FC Sellier & Bellot Vlašim | 2:0 (1:0) | |
| 16:30 | FK Varnsdorf | - | MFK Vítkovice | 1:2 (0:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Sigma Olomouc | 20 | 14 | 4 | 2 | 38:11 | 27 | 46 |
| 2 |
|
Baník Ostrava | 20 | 12 | 6 | 2 | 32:15 | 17 | 42 |
| 3 |
|
SFC Opava | 20 | 10 | 5 | 5 | 37:22 | 15 | 35 |
| 4 |
|
Dynamo České Budějovice | 20 | 9 | 7 | 4 | 24:14 | 10 | 34 |
| 5 |
|
1. SC Znojmo | 20 | 9 | 6 | 5 | 36:28 | 8 | 33 |
| 6 |
|
FC Sellier & Bellot Vlašim | 20 | 9 | 5 | 6 | 33:26 | 7 | 32 |
| 7 |
|
Viktoria Žižkov | 20 | 8 | 6 | 6 | 33:23 | 10 | 30 |
| 8 |
|
MFK Frýdek-Místek, a.s. | 20 | 7 | 6 | 7 | 36:35 | 1 | 27 |
| 9 |
|
FK MAS Táborsko | 20 | 7 | 6 | 7 | 26:31 | -5 | 27 |
| 10 |
|
FK Varnsdorf | 20 | 7 | 4 | 9 | 28:27 | 1 | 25 |
| 11 |
|
FK Ústí nad Labem | 20 | 7 | 4 | 9 | 20:27 | -7 | 25 |
| 12 |
|
FK Fotbal Třinec | 20 | 5 | 6 | 9 | 26:35 | -9 | 21 |
| 13 |
|
FK Pardubice | 20 | 5 | 5 | 10 | 15:28 | -13 | 20 |
| 14 |
|
FK Baník Sokolov | 20 | 4 | 7 | 9 | 20:33 | -13 | 19 |
| 15 |
|
MFK Vítkovice | 20 | 4 | 2 | 14 | 19:35 | -16 | 14 |
| 16 |
|
1. SK Prostějov | 20 | 2 | 3 | 15 | 16:49 | -33 | 9 |
| Aufstieg | |
| Abstieg |
