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| 11.12.2009 | 18:30 | SV Wehen Wiesbaden | - | FC Carl Zeiss Jena | 1:1 (0:0) | |
| 12.12.2009 | 14:00 | Holstein Kiel | - | Jahn Regensburg | 1:0 (0:0) | |
| 14:00 | VfB Stuttgart II | - | Dynamo Dresden | 2:2 (1:1) | ||
| 14:00 | SV Sandhausen | - | SpVgg Unterhaching | 3:1 (1:1) | ||
| 14:00 | Erzgebirge Aue | - | Kickers Offenbach | 4:2 (0:2) | ||
| 14:00 | Rot-Weiß Erfurt | - | Werder Bremen II | 1:1 (0:1) | ||
| 14:00 | Borussia Dortmund II | - | Wacker Burghausen | 3:0 (2:0) | ||
| 14:00 | Wuppertaler SV | - | 1. FC Heidenheim 1846 | 1:2 (0:1) | ||
| 14:07 | VfL Osnabrück | - | Eintracht Braunschweig | 1:0 (1:0) | ||
| 06.04.2010 | 19:00 | Bayern München II | - | FC Ingolstadt 04 | 1:0 (0:0) |
| » Tabelle | Heim | Auswärts | Hinrunde | Rückrunde | 1. Halbzeit | 2. Halbzeit |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
VfL Osnabrück | 20 | 11 | 3 | 6 | 31:21 | 10 | 36 |
| 2 |
|
Erzgebirge Aue | 20 | 10 | 4 | 6 | 30:25 | 5 | 34 |
| 3 |
|
FC Ingolstadt 04 | 20 | 10 | 3 | 7 | 39:23 | 16 | 33 |
| 4 |
|
Kickers Offenbach | 20 | 9 | 6 | 5 | 35:23 | 12 | 33 |
| 5 |
|
Eintracht Braunschweig | 20 | 8 | 6 | 6 | 28:21 | 7 | 30 |
| 6 |
|
SV Sandhausen | 20 | 8 | 6 | 6 | 37:35 | 2 | 30 |
| 7 |
|
Rot-Weiß Erfurt | 20 | 8 | 6 | 6 | 25:23 | 2 | 30 |
| 8 |
|
Wacker Burghausen | 20 | 9 | 3 | 8 | 23:33 | -10 | 30 |
| 9 |
|
Jahn Regensburg | 20 | 8 | 5 | 7 | 27:21 | 6 | 29 |
| 10 |
|
SpVgg Unterhaching | 20 | 8 | 5 | 7 | 30:29 | 1 | 29 |
| 11 |
|
1. FC Heidenheim 1846 | 20 | 8 | 4 | 8 | 36:32 | 4 | 28 |
| 12 |
|
FC Carl Zeiss Jena | 20 | 7 | 6 | 7 | 24:29 | -5 | 27 |
| 13 |
|
SV Wehen Wiesbaden | 20 | 7 | 5 | 8 | 25:32 | -7 | 26 |
| 14 |
|
Bayern München II | 20 | 7 | 5 | 8 | 27:36 | -9 | 26 |
| 15 |
|
Werder Bremen II | 20 | 7 | 4 | 9 | 26:29 | -3 | 25 |
| 16 |
|
VfB Stuttgart II | 20 | 7 | 2 | 11 | 27:30 | -3 | 23 |
| 17 |
|
Holstein Kiel | 20 | 6 | 4 | 10 | 23:28 | -5 | 22 |
| 18 |
|
Borussia Dortmund II | 20 | 6 | 4 | 10 | 22:27 | -5 | 22 |
| 19 |
|
Wuppertaler SV | 20 | 6 | 4 | 10 | 21:32 | -11 | 22 |
| 20 |
|
Dynamo Dresden | 20 | 5 | 5 | 10 | 21:28 | -7 | 20 |
| Aufstieg | |
| Relegation | |
| Abstieg |
